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LLC for Shopify Stores: 2026 Setup Guide

Run a Shopify store through an anonymous LLC. Shopify Payments / merchant account in the LLC's name. Multi-store and DTC supported.

By Shafwan Ahmed, Operations & Fulfillment Lead, Anonymousllc.co

Recommended structure

Wyoming anonymous LLC for one or multiple Shopify stores. The LLC opens Shopify Payments under EIN, holds the Shopify Plan subscription, manages all merchant relationships. For DTC brands with substantial inventory, foreign-qualify in the warehouse state and register for sales tax wherever economic nexus is crossed.

Why an anonymous LLC

Shopify store founders run brands that are highly Googleable. Customers and competitors routinely look up the legal entity. State records frequently surface founder names. An anonymous LLC keeps WHOIS, Stripe records, and Secretary of State filings off the search trail.

Best state: Wyoming

Standard for ecommerce founders. No state income tax. Best banking acceptance for Shopify Payments. Operating agreement flexibility lets you bring in investors or co-founders later without re-forming.

Cost breakdown

StatePriceNotes
Wyoming (recommended)$397Best balance of cost, anonymity, banking acceptance.
New Mexico$347Cheapest. No annual report. Banking is harder.
Delaware$407Strong for outside-investor setups. $300/yr franchise tax.

How to get started

  • 1.Form Wyoming anonymous LLC + EIN + operating agreement
  • 2.Open business bank account (required for Shopify Payments)
  • 3.Connect Shopify Payments to the LLC's EIN and bank account — replace any personal SSN
  • 4.Update theme footer / 'sold by' line / return address to the LLC name and Wyoming RA address
  • 5.Register for sales tax in states where economic nexus is crossed

Common mistakes

  • Running Shopify Payments under personal SSN — switch as soon as you have an LLC
  • Forgetting to update return labels and shipping addresses — your home address leaks via every return
  • Skipping economic nexus registration — state DOR notices can stack up quickly
  • Not maintaining separate accounting per brand if running multiple stores under one LLC

Anonymity scope

Your name does not appear on state filings (Articles of Organization, annual report). Your name DOES appear at the bank under BSA/CIP, with the IRS on tax filings, and can be discovered through court subpoena. Customers, vendors, and passive public searchers cannot find you through Secretary of State records.

FAQ

Can I run multiple Shopify stores under one LLC?

Yes. Each Shopify store is a separate subscription, but all are owned by the same legal entity.

Do I need to register for sales tax in every state Shopify ships to?

Only states where you've crossed economic nexus (typically $100k or 200 transactions). Shopify's Tax tool tracks nexus per state.

Will Shopify Payments accept an anonymous LLC?

Yes. Shopify Payments is powered by Stripe; both accept Wyoming LLCs with the standard EIN + business bank account documents.

Do I need to file BOI / FinCEN paperwork?

As of March 21, 2025, domestic reporting companies are exempt from BOI under the FinCEN interim final rule. Most US-formed LLCs are currently exempt. Foreign-formed reporting companies still file.

Ready to form your anonymous LLC?

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