LLC owners with pass-through income pay estimated taxes four times a year using Form 1040-ES. Nobody withholds tax from your business income, so you send it in yourself on the IRS pay-as-you-go schedule.
By Alif Al Razi, Tax & Compliance Lead, Anonymousllc.co
Updated July 2026
Yes. Most LLC owners with pass-through income must pay estimated taxes four times a year, because an LLC does not withhold tax from your earnings the way an employer withholds from a paycheck. The IRS runs a pay-as-you-go system, so you send the tax in as you earn the income rather than in one lump sum the following April.
This covers single-member LLCs taxed on Schedule C, multi-member LLCs taxed as partnerships, and LLC members who elected S-corp status and take distributions beyond their W-2 salary. You figure and pay these amounts on Form 1040-ES. The rule applies whenever you expect to owe $1,000 or more in tax for the year after subtracting any withholding and credits.
The four estimated-tax payments are due in April, June, September, and January of the next year. The periods are uneven, so the calendar does not split into clean three-month blocks. The table below shows the income period each payment covers and its deadline.
| Payment | Income earned during | Payment due date |
|---|---|---|
| Q1 | January 1 to March 31 | April 15 |
| Q2 | April 1 to May 31 | June 15 |
| Q3 | June 1 to August 31 | September 15 |
| Q4 | September 1 to December 31 | January 15 of the next year |
When a due date lands on a weekend or federal holiday, the deadline moves to the next business day.
You calculate each payment by estimating your total tax for the year and dividing it across the four periods. Project your net business profit, add any other taxable income, then apply both income tax and self-employment tax to your net earnings from the business. The Form 1040-ES worksheet walks through the full computation and factors in your deductions and credits.
Self-employment tax runs 15.3% on net earnings and covers Social Security and Medicare, so it can exceed the income-tax portion of the bill for a profitable single-member LLC. Read our guide to single-member LLC taxes for how the Schedule C profit flows onto your personal return. Once you know the annual figure, you pay one quarter of it by each deadline.
The safe-harbor rule lets you avoid an underpayment penalty even if you owe more at filing, as long as you prepaid enough during the year. You meet the safe harbor when your estimated payments and withholding total at least 90% of the current year's tax or 100% of the tax shown on last year's return, whichever is smaller.
Higher earners face a stricter version. If your adjusted gross income last year was more than $150,000, you must pay 110% of last year's tax to use the prior-year safe harbor. Paying to the safe harbor is the cleanest way to stay penalty-free when your income swings from quarter to quarter, since it pins your target to a known number instead of a moving estimate.
Underpaying triggers an IRS penalty calculated on Form 2210. The penalty is not a flat fine. The IRS charges interest on the shortfall for each period it went unpaid, using the federal underpayment interest rate that applies to that quarter.
Because each of the four periods stands on its own, you can owe a penalty for an early quarter even if you catch up later in the year. Paying a large amount in Q4 does not erase a Q1 shortfall. The fix is to pay each installment on time and to the safe harbor. If you did underpay, Form 2210 computes the amount, and the IRS will bill it with your return.
Yes. Your quarterly payments cover both income tax and self-employment tax in a single amount. There is no separate voucher or schedule for the Social Security and Medicare portion, so the figure you send with each Form 1040-ES voucher rolls the two together.
This is why the size of the bill surprises many LLC owners. An employee splits Social Security and Medicare with an employer, but an LLC owner pays the full 15.3% self-employment tax on net earnings on top of income tax. Estimating only the income-tax slice leaves you short and exposed to a penalty.
Set aside a fixed share of every payment the business receives, moving 25% to 35% of net profit into a separate tax savings account as the money arrives. Because no employer withholds tax for you, this discipline turns four large quarterly bills into a non-event.
The right percentage tracks your income tax bracket plus the 15.3% self-employment tax and any state income tax. A profitable single-member LLC in a no-income-tax state reserves 25% to 30%, while a higher earner in a taxed state moves toward 35%. Transfer the set-aside the day a client pays, not at quarter end, so the cash is never spent before the deadline. Keeping the reserve in a separate account also stops you from mistaking tax money for profit.
After an S-corp election, part of your income moves to a W-2 salary with taxes withheld through payroll, which shrinks the estimated payments you make personally. You still send estimates on the distribution portion of profit, since payroll withholding covers only the salary.
The mechanics shift because the salary carries automatic withholding for income tax, Social Security, and Medicare, the same way an employee's paycheck does. Distributions above the salary carry no withholding, so you cover the tax on them through Form 1040-ES or by raising the withholding on your salary. Owners who elect S-corp status should recheck their estimated-payment math after the first payroll run, because the split changes how much lands in each bucket. See our S-corp election guide for the full picture.
Non-resident LLC owners with a US filing obligation pay estimated taxes using Form 1040-ES(NR) and file a Form 1040-NR return. The same $1,000 threshold and the same four due dates apply, so the mechanics track the resident rules closely.
Whether a non-resident owner owes US tax at all depends on whether the LLC income is effectively connected to a US trade or business, which is a facts-driven question best confirmed with a cross-border CPA. A foreign-owned single-member LLC also files Form 5472 each year, separate from any estimated-tax duty, and the penalty for missing that filing starts at $25,000.
You pay online through IRS Direct Pay, the Electronic Federal Tax Payment System (EFTPS), or by mailing a Form 1040-ES voucher with a check. Direct Pay and EFTPS are free and post fast, and EFTPS keeps a running record of every payment you have made during the year.
Set a reminder for each of the four deadlines, and pay to your safe-harbor target so the penalty math cannot reach you. If your state has an income tax, it runs its own parallel estimated-payment schedule, so budget for both. Keep confirmation numbers with your records to reconcile against Form 1040-ES when you file.
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